Useful resources

(0-9)

• 10X Genomics: Cell Ranger Software support

A

• Anvil: NHGRI’s Genomic Data Science Analysis, Visualization, and Informatics Lab-Space.

B

• bioinformatics.ca: Home of the Canadian Bioinformatics Workshops series.
  Course Material
  YouTube videos

C

• Cellar: Interactive tool for analyzing single-cell omics data
• ClinVar: NCBI’s public archive of reports of the relationships among human variations and phenotypes.
• CQDG: The Québec Genomic Data Center (Centre québécois de données génomiques)

D

• DRAGEN: The Illumina DRAGEN (Dynamic Read Analysis for GENomics) Bio-IT Platform is a commercial platform that provides secondary genomic analysis of sequencing data. from Illumina

G

• gnomAD The Genome Aggregation Database (gnomAD), is a coalition of investigators seeking to aggregate and harmonize exome and genome sequencing data from a variety of large-scale sequencing projects.
• genebass A resource of exome-based association statistics.

H

• Hail: An open-source library for scalable genomic data exploration.
• Human Phenotype Ontology: a standardized vocabulary of phenotypic abnormalities.

M

• Medical and Population genetics primer playlist (part of the Broad’s YouTube channel)

S

• Seqr: a web-based tool for rare disease genomics.
  Seqr on GitHub
  Training videos for use of seqr
• Scotty - Power Analysis for RNA Seq Experiments PubMed 23314327
• Single Cell RNA Open datasets:
  From 10X Genomics
  A multi-center cross-platform single-cell RNA sequencing reference dataset PubMed 33531477

U

• UCSC Genome Browsers https://genome.ucsc.edu/
  The UCSC Genome Browser is a web-based tool serving as a multi-powered microscope that allows researchers to view all 23 chromosomes of the human genome at any scale from a full chromosome down to an individual nucleotide. (source)
  Human Genome Browser
  FAQ File formats
  

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